Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KIRP | rs311818 | chr14:59169095 | A/T | 4.98E-6 | 214 | 14.97 | 17 | 10.83 | KM Plot |
| KIRP | rs311828 | chr14:59174360 | A/G | 5.86E-6 | 213 | 15.07 | 16.93 | 10.83 | KM Plot |
| KIRP | rs317837 | chr18:55339224 | G/A | 0.000639 | 206 | 12.18 | 15.75 | 16.5 | KM Plot |
| KIRP | rs3180413 | chr10:102034458 | A/G | 6.35E-6 | 213 | 16.43 | 22.77 | 3.6 | KM Plot |
| KIRP | rs3214424 | chr12:108942775 | C/G | 0.000472 | 211 | 16.5 | 13.2 | 11.43 | KM Plot |
| KIRP | rs33931652 | chr5:176681797 | TA/T | 5.59E-7 | 208 | 9.77 | 20.9 | 15.2 | KM Plot |
| KIRP | rs33965491 | chr10:102046380 | T/G | 5.7E-6 | 213 | 15.33 | 22.77 | 3.6 | KM Plot |
| KIRP | rs34015405 | chr16:20473594 | A/G | 0.000386 | 211 | 16.43 | 13.6 | 5.88 | KM Plot |
| KIRP | rs34038546 | chr6:27607660 | C/A | 1.98E-7 | 213 | 16.45 | 15.02 | 9.77 | KM Plot |
| KIRP | rs34040188 | chr10:70675093 | C/T | 7.37E-9 | 214 | 15.2 | 16.97 | 10.6 | KM Plot |
| KIRP | rs34059271 | chr11:8567858 | T/C | 0.000403 | 214 | 16.43 | 17.2 | 4.82 | KM Plot |
| KIRP | rs34064188 | chr10:63512548 | C/CT | 0 | 214 | 17.57 | 10.3 | 2.13 | KM Plot |
| KIRP | rs34064842 | chr6:27688625 | G/T | 1.97E-7 | 213 | 16.5 | 12.8 | 9.77 | KM Plot |
| KIRP | rs34074694 | chr1:89462846 | A/ATTAG | 0.000566 | 204 | 20.15 | 19.3 | 8.73 | KM Plot |
| KIRP | rs34090679 | chr3:100040952 | AT/A | 4.46E-5 | 208 | 16.43 | 18.88 | 4.67 | KM Plot |